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Y chromosome FISH

Also known as: Y FISH, Y chromosome FISH panel

Test category:

Paediatric - Congenital disorder; Reproductive - Infertility

Use of test


The Y chromosome is the smallest of the human chromosomes. It may not be possible to resolve details of a structural abnormality of the Y chromosome by conventional chromosome studies. Clarification of any structural alterations using FISH probes can provide diagnostic and prognostic information, for example, in men with azoospermia.


The test report will define the structural rearrangements of the Y chromosome and indicate the potential clinical significance of these rearrangements.

Ethical considerations:

This is an assay for heritable mutations. It may raise issues of ethics or consent that are different from most other investigations ordered in the routine care of a patient. The consent form (below) is not mandated, but could be used to guide the discussion with the patient.

In the case of carrier testing of an unaffected child, national regulations require that the laboratory has evidence of pre-test counselling by a genetics professional and written consent.

Consent form:

Download the Sonic Genetics consent form.


The FISH panel contains probes for the centromere, long and short arms of the Y chromosome.

Requesting the test


This test can be requested by any medical practitioner. The test is usually performed following identification of a Y chromosome abnormality with conventional chromosome analysis.

Sample required:

2-5 mL blood in EDTA and 2-5 mL blood in lithium-heparin. Specimens may be collected by the requesting practitioner or at any Sonic Healthcare collection centre (see link below).

To help ensure the quality of the test, a genetic test should be done with a dedicated sample whenever possible i.e. a sample collected specifically for that test rather than a sample that is used for multiple tests.

We recommend that the patient or another adult check the labelling of request forms and sample tubes. 

>Link to Sonic Healthcare collection centres

Turnaround time:

15 business days for karyotype and FISH study; 3 business days for FISH alone.



The laboratory assumes that the requestor has obtained financial consent from the patient for this test.


There is no Medicare rebate for this test. If more information is required, the requesting clinician can call our laboratory on (07) 3377 8573.

Click here for our billing policy.